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Research  |
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FTFD: An Informatics Pipeline Supporting Phylogenomic Analysis of Fungal Transcription Factors
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 Authours
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Jongsun Park, Jaejin Park, Suwang Jang, Seryun Kim, Sunghyung Kong, Jaeoung Choi, Kyohun Ahn, Juhyeon Kim, Seungmin Lee, Sunggon Kim, Bongsoo Park, KyongyongJung, Soonok Kim, Seogchan Kang, and Yong-Hwan Lee |
| Title |
FTFD: An Informatics Pipeline Supporting Phylogenomic Analysis of Fungal Transcription Factors |
| Journal |
Bioinformatics, 2008 (24) ~ |
Abstract
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Summary: Genomes of more than 60 fungal species have been
sequenced to date, yet there has been no systematic approach to
analyze fungal transcription factors (TFs) kingdom-widely. We developed
a standardized pipeline for annotating TFs in fungal genomes.
Resulting data have been archived in a new database
termed the Fungal Transcription Factor Database (FTFD). In FTFD,
31,832 putative fungal TFs, identified from 62 fungal and 3 Oomycete
species, were classified into 61 families and phylogenetically
analyzed. The FTFD will serve as a community resource supporting
comparative analyses of the distribution and domain structure of TFs
within and across species.
Availability: All data described in this study can be browsed through
the FTFD web site at http://ftfd.snu.ac.kr/.
Contact: yonglee@snu.ac.kr |
Link
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