| |
|
|
| |
|
|
Research  |
|
|
|
| |
| |
CFGP 2.0: a versatile web-based platform for supporting comparative and evolutionary genomics of fungi and Oomycetes
|
|
|
|
|
|
| |
|
 Authours
|
Jaeyoung Choi, Kyeongchae Cheong, Kyongyong Jung, Jongbum Jeon,
Gir-Won Lee, Seogchan Kang, Sangsoo Kim, Yin-Won Lee and
Yong-Hwan Lee |
| Title |
CFGP 2.0: a versatile web-based platform for supporting comparative and evolutionary genomics of fungi and Oomycetes |
| Journal |
Nucleic Acids Research, 2013 (41) ~ |
Abstract
|
In 2007, Comparative Fungal Genomics Platform
(CFGP; http://cfgp.snu.ac.kr/) was publicly open
with 65 genomes corresponding to 58 fungal and
Oomycete species. The CFGP provided six bioinformatics
tools, including a novel tool entitled
BLASTMatrix that enables search homologous
genes to queries in multiple species simultaneously.
CFGP also introduced Favorite, a personalized
virtual space for data storage and analysis with
these six tools. Since 2007, CFGP has grown to
archive 283 genomes corresponding to 152 fungal
and Oomycete species as well as 201 genomes
that correspond to seven bacteria, 39 plants and
105 animals. In addition, the number of tools in
Favorite increased to 27. The Taxonomy Browser
of CFGP 2.0 allows users to interactively navigate
through a large number of genomes according to
their taxonomic positions. The user interface of
BLASTMatrix was also improved to facilitate subsequent
analyses of retrieved data. A newly developed
genome browser, Seoul National University Genome
Browser (SNUGB), was integrated into CFGP 2.0 to
support graphical presentation of diverse genomic
contexts. Based on the standardized genome warehouse
of CFGP 2.0, several systematic platforms
designed to support studies on selected gene
families have been developed. Most of them are
connected through Favorite to allow of sharing
data across the platforms. |
Link
|
 |
|
|
| |
|
|
|
|
| |
|
|
|
|
